IL_8IP9_018

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUAAAUCCG*CAU

Length

14 nucleotides

Bulged bases

8IP9|1|aa|A|216, 8IP9|1|aa|U|243

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_018 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.2551

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8IP9|1|aa|A|210
8IP9|1|aa|G|211
8IP9|1|aa|A|212
8IP9|1|aa|U|213
8IP9|1|aa|A|214
8IP9|1|aa|A|215
8IP9|1|aa|A|216
8IP9|1|aa|U|243
8IP9|1|aa|C|244
8IP9|1|aa|C|245
8IP9|1|aa|G|246
*
8IP9|1|aa|C|253
8IP9|1|aa|A|254
8IP9|1|aa|U|255

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ib

40S ribosomal protein uS17

Chain ja

40S ribosomal protein eS4