IL_8IP9_023

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_023 not in the Motif Atlas

Homologous match to IL_8P9A_393

Geometric discrepancy: 0.2641

The information below is about IL_8P9A_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8IP9|1|aa|G|367
8IP9|1|aa|A|368
8IP9|1|aa|G|369
*
8IP9|1|aa|C|380
8IP9|1|aa|G|381
8IP9|1|aa|A|382
8IP9|1|aa|U|383
8IP9|1|aa|U|384
8IP9|1|aa|C|385

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain eb

40S ribosomal protein uS4

Chain ga

40S ribosomal protein S23

Chain ja

40S ribosomal protein eS4