IL_8IP9_034

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8IP9|1|aa|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_034 not in the Motif Atlas

Geometric match to IL_2OIU_003

Geometric discrepancy: 0.2495

The information below is about IL_2OIU_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8IP9|1|aa|G|561
8IP9|1|aa|U|562
8IP9|1|aa|C|563
*
8IP9|1|aa|G|590
8IP9|1|aa|C|591

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ia

40S ribosomal protein uS3

Chain ya

40S ribosomal protein eS30