IL_8IP9_040

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_040 not in the Motif Atlas

Geometric match to IL_4JGN_004

Geometric discrepancy: 0.1962

The information below is about IL_4JGN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8IP9|1|aa|C|648
8IP9|1|aa|C|649
8IP9|1|aa|G|650
*
8IP9|1|aa|C|701
8IP9|1|aa|G|702
8IP9|1|aa|G|703

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain va

40S ribosomal protein uS8