IL_8IP9_046

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_046 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1111

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8IP9|1|aa|A|870
8IP9|1|aa|G|871
*
8IP9|1|aa|C|967
8IP9|1|aa|A|968
8IP9|1|aa|U|969
8IP9|1|aa|U|970

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain pa

40S ribosomal protein uS15

Chain va

40S ribosomal protein uS8

Chain xa

40S ribosomal protein eS27