IL_8IP9_056

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_056 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.2907

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

8IP9|1|aa|A|1056
8IP9|1|aa|U|1057
8IP9|1|aa|G|1058
*
8IP9|1|aa|C|1071
8IP9|1|aa|U|1072

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain bb

40S ribosomal protein eS1

Chain xa

40S ribosomal protein eS27

Chain za

40S ribosomal protein uS2