IL_8IP9_071

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8IP9|1|aa|A|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_071 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.1201

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8IP9|1|aa|C|1284
8IP9|1|aa|G|1285
*
8IP9|1|aa|C|1432
8IP9|1|aa|A|1433
8IP9|1|aa|G|1434

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain fb

40S ribosomal protein uS5

Chain ia

40S ribosomal protein uS3

Chain la

40S ribosomal protein uS9

Chain ma

40S ribosomal protein uS10

Chain wa

40S ribosomal protein uS14