IL_8IP9_072
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP9_072 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.2478
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8IP9|1|aa|U|1293
8IP9|1|aa|U|1294
8IP9|1|aa|G|1295
8IP9|1|aa|G|1296
*
8IP9|1|aa|C|1327
8IP9|1|aa|G|1328
8IP9|1|aa|A|1329
8IP9|1|aa|A|1330
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain fb
- 40S ribosomal protein uS5
- Chain ia
- 40S ribosomal protein uS3
- Chain qa
- 40S ribosomal protein eS17
- Chain za
- 40S ribosomal protein uS2
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