IL_8IP9_077
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUAU*ACGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP9_077 not in the Motif Atlas
- Geometric match to IL_5J7L_053
- Geometric discrepancy: 0.2998
- The information below is about IL_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8IP9|1|aa|C|1395
8IP9|1|aa|U|1396
8IP9|1|aa|A|1397
8IP9|1|aa|U|1398
*
8IP9|1|aa|A|1412
8IP9|1|aa|C|1413
8IP9|1|aa|G|1414
8IP9|1|aa|G|1415
8IP9|1|aa|A|1416
8IP9|1|aa|A|1417
8IP9|1|aa|G|1418
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ha
- RACK1
- Chain ka
- 40S ribosomal protein uS7
- Chain la
- 40S ribosomal protein uS9
- Chain qa
- 40S ribosomal protein eS17
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