IL_8IP9_081

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_081 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.0819

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8IP9|1|aa|G|1548
8IP9|1|aa|G|1549
8IP9|1|aa|G|1550
8IP9|1|aa|A|1551
8IP9|1|aa|U|1552
8IP9|1|aa|A|1553
*
8IP9|1|aa|U|1574
8IP9|1|aa|U|1575
8IP9|1|aa|C|1576
8IP9|1|aa|A|1577
8IP9|1|aa|A|1578
8IP9|1|aa|C|1579

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ka

40S ribosomal protein uS7

Chain oa

40S ribosomal protein uS13

Chain ra

40S ribosomal protein eS19