IL_8IP9_091

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAA*UGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_091 not in the Motif Atlas

Homologous match to IL_8C3A_478

Geometric discrepancy: 0.0596

The information below is about IL_8C3A_478

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8IP9|1|aa|U|1677
8IP9|1|aa|G|1678
8IP9|1|aa|A|1679
8IP9|1|aa|A|1680
*
8IP9|1|aa|U|1739
8IP9|1|aa|G|1740
8IP9|1|aa|A|1741
8IP9|1|aa|A|1742

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain gb

40S ribosomal protein eS6