IL_8IP9_100

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8IP9|1|aa|U|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_100 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3403

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8IP9|1|aa|G|873
8IP9|1|aa|A|874
*
8IP9|1|aa|U|963
8IP9|1|aa|U|964
8IP9|1|aa|U|965

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain pa

40S ribosomal protein uS15

Chain xa

40S ribosomal protein eS27