3D structure

PDB id
8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wheat 40S ribosome in complex with a tRNAi
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGCAUGG*UCUGUCAUG
Length
16 nucleotides
Bulged bases
8IP9|1|aa|C|1278, 8IP9|1|aa|U|1438, 8IP9|1|aa|C|1441
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IP9_105 not in the Motif Atlas
Geometric match to IL_4V88_510
Geometric discrepancy: 0.091
The information below is about IL_4V88_510
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62984.1
Basepair signature
cWW-tHS-tWH-cWH-cWW-L-L-cWW
Number of instances in this motif group
1

Unit IDs

8IP9|1|aa|U|1276
8IP9|1|aa|G|1277
8IP9|1|aa|C|1278
8IP9|1|aa|A|1279
8IP9|1|aa|U|1280
8IP9|1|aa|G|1281
8IP9|1|aa|G|1282
*
8IP9|1|aa|U|1436
8IP9|1|aa|C|1437
8IP9|1|aa|U|1438
8IP9|1|aa|G|1439
8IP9|1|aa|U|1440
8IP9|1|aa|C|1441
8IP9|1|aa|A|1442
8IP9|1|aa|U|1443
8IP9|1|aa|G|1444

Current chains

Chain aa
18S ribosomal RNA

Nearby chains

Chain da
40S ribosomal protein eS10
Chain ia
40S ribosomal protein uS3
Chain ma
40S ribosomal protein uS10
Chain wa
40S ribosomal protein uS14

Coloring options:


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