IL_8IP9_108
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCUAU*AGCUAGC
- Length
- 12 nucleotides
- Bulged bases
- 8IP9|1|aa|C|1378, 8IP9|1|aa|G|1381
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP9_108 not in the Motif Atlas
- Geometric match to IL_6CZR_167
- Geometric discrepancy: 0.3595
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8IP9|1|aa|G|1353
8IP9|1|aa|C|1354
8IP9|1|aa|U|1355
8IP9|1|aa|A|1356
8IP9|1|aa|U|1357
*
8IP9|1|aa|A|1376
8IP9|1|aa|G|1377
8IP9|1|aa|C|1378
8IP9|1|aa|U|1379
8IP9|1|aa|A|1380
8IP9|1|aa|G|1381
8IP9|1|aa|C|1382
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ha
- RACK1
- Chain la
- 40S ribosomal protein uS9
- Chain ma
- 40S ribosomal protein uS10
- Chain ra
- 40S ribosomal protein eS19
Coloring options: