IL_8IPD_022

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8IPD|1|2|G|483, 8IPD|1|2|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_022 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1699

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8IPD|1|2|G|482
8IPD|1|2|G|483
8IPD|1|2|U|484
8IPD|1|2|C|485
*
8IPD|1|2|G|671
8IPD|1|2|C|672

Current chains

Chain 2

28S rRNA

Nearby chains