IL_8IPD_114

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_114 not in the Motif Atlas

Geometric match to IL_5J7L_314

Geometric discrepancy: 0.1943

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8IPD|1|2|C|3700
8IPD|1|2|OMC|3701
8IPD|1|2|A|3702
8IPD|1|2|G|3703
*
8IPD|1|2|C|3749
8IPD|1|2|G|3750

Current chains

Chain 2

28S rRNA

Nearby chains

Chain m

60S ribosomal protein L8

Chain w

G Protein Nucleolar 2