IL_8IPD_120

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC(B8K)G*U(M7A)C

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8K, M7A

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_120 not in the Motif Atlas

Homologous match to IL_8C3A_096

Geometric discrepancy: 0.1099

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8IPD|1|2|G|3895
8IPD|1|2|C|3896
8IPD|1|2|B8K|3897
8IPD|1|2|G|3898
*
8IPD|1|2|U|4563
8IPD|1|2|M7A|4564
8IPD|1|2|C|4565

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L13a