IL_8IPD_171
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGG*CCUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPD_171 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.2355
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8IPD|1|3|U|79
8IPD|1|3|U|80
8IPD|1|3|G|81
8IPD|1|3|G|82
*
8IPD|1|3|C|94
8IPD|1|3|C|95
8IPD|1|3|U|96
8IPD|1|3|G|97
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain b
- 60S ribosomal protein L18a
- Chain p
- 60S ribosomal protein L7
- Chain u
- Guanine nucleotide-binding protein-like 3
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