IL_8IPX_065

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

8IPX|1|2|A|1699, 8IPX|1|2|G|1700, 8IPX|1|2|C|1707, 8IPX|1|2|C|1714, 8IPX|1|2|C|1718

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPX|1|2|C|1694
8IPX|1|2|U|1695
8IPX|1|2|C|1696
8IPX|1|2|G|1697
8IPX|1|2|C|1698
8IPX|1|2|A|1699
8IPX|1|2|G|1700
8IPX|1|2|A|1701
8IPX|1|2|C|1702
8IPX|1|2|C|1703
8IPX|1|2|C|1704
8IPX|1|2|G|1705
8IPX|1|2|A|1706
8IPX|1|2|C|1707
8IPX|1|2|G|1708
8IPX|1|2|C|1709
8IPX|1|2|C|1714
8IPX|1|2|C|1715
8IPX|1|2|G|1716
8IPX|1|2|C|1717
8IPX|1|2|C|1718
8IPX|1|2|A|1719
8IPX|1|2|C|1720
8IPX|1|2|G|1721
*
8IPX|1|2|C|1841
8IPX|1|2|G|1842

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain T

60S ribosomal protein L21

Chain Z

60S ribosomal protein L18

Chain p

60S ribosomal protein L7