IL_8IPX_067

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

8IPX|1|2|G|1815

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPX_067 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.4698

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8IPX|1|2|C|1814
8IPX|1|2|G|1815
8IPX|1|2|C|1816
*
8IPX|1|2|G|1823
8IPX|1|2|G|1824

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L5

Chain T

60S ribosomal protein L21