IL_8IPX_080
3D structure
- PDB id
- 8IPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 8IPX|1|2|A|2002
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPX_080 not in the Motif Atlas
- Homologous match to IL_8C3A_059
- Geometric discrepancy: 0.211
- The information below is about IL_8C3A_059
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8IPX|1|2|G|2001
8IPX|1|2|A|2002
8IPX|1|2|G|2003
8IPX|1|2|U|2004
8IPX|1|2|G|2005
*
8IPX|1|2|C|2014
8IPX|1|2|U|2015
8IPX|1|2|C|2016
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain r
- Coiled-coil domain-containing protein 86
- Chain v
- mRNA turnover protein 4 homolog
- Chain y
- 60S ribosomal protein L12
Coloring options: