IL_8IPX_107

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

8IPX|1|2|G|3592, 8IPX|1|2|C|3593, 8IPX|1|2|U|3595, 8IPX|1|2|A|3596

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPX|1|2|G|2901
8IPX|1|2|G|2902
8IPX|1|2|G|2903
8IPX|1|2|U|2904
8IPX|1|2|C|2905
*
8IPX|1|2|G|3589
8IPX|1|2|G|3590
8IPX|1|2|C|3591
8IPX|1|2|G|3592
8IPX|1|2|C|3593
8IPX|1|2|C|3594
8IPX|1|2|U|3595
8IPX|1|2|A|3596
8IPX|1|2|G|3597
8IPX|1|2|C|3598

Current chains

Chain 2

28S rRNA

Nearby chains

Chain a

60S ribosomal protein L19

Chain f

Ribosome biogenesis protein NOP53