IL_8IPX_125

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUCAG*CGUGGAGCAGAAGGGCAAAAG

Length

26 nucleotides

Bulged bases

8IPX|1|2|A|4271, 8IPX|1|2|G|4272, 8IPX|1|2|A|4273, 8IPX|1|2|A|4274, 8IPX|1|2|A|4280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPX|1|2|C|4241
8IPX|1|2|U|4242
8IPX|1|2|C|4243
8IPX|1|2|A|4244
8IPX|1|2|G|4245
*
8IPX|1|2|C|4263
8IPX|1|2|G|4264
8IPX|1|2|U|4265
8IPX|1|2|G|4266
8IPX|1|2|G|4267
8IPX|1|2|A|4268
8IPX|1|2|G|4269
8IPX|1|2|C|4270
8IPX|1|2|A|4271
8IPX|1|2|G|4272
8IPX|1|2|A|4273
8IPX|1|2|A|4274
8IPX|1|2|G|4275
8IPX|1|2|G|4276
8IPX|1|2|G|4277
8IPX|1|2|C|4278
8IPX|1|2|A|4279
8IPX|1|2|A|4280
8IPX|1|2|A|4281
8IPX|1|2|A|4282
8IPX|1|2|G|4283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L11

Chain R

60S ribosomal protein L5

Chain T

60S ribosomal protein L21