IL_8IPX_151

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGUG

Length

19 nucleotides

Bulged bases

8IPX|1|2|C|4757, 8IPX|1|2|U|4758, 8IPX|1|2|A|4764, 8IPX|1|2|G|4873, 8IPX|1|2|A|4874, 8IPX|1|2|U|4876

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPX|1|2|C|4756
8IPX|1|2|C|4757
8IPX|1|2|U|4758
8IPX|1|2|C|4759
8IPX|1|2|G|4760
8IPX|1|2|G|4761
8IPX|1|2|A|4762
8IPX|1|2|U|4763
8IPX|1|2|A|4764
8IPX|1|2|G|4765
*
8IPX|1|2|U|4869
8IPX|1|2|OMG|4870
8IPX|1|2|C|4871
8IPX|1|2|2MG|4872
8IPX|1|2|G|4873
8IPX|1|2|A|4874
8IPX|1|2|G|4875
8IPX|1|2|U|4876
8IPX|1|2|G|4877

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain b

60S ribosomal protein L18a

Chain o

60S ribosomal protein L6