IL_8IPY_018

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8IPY|1|2|C|1301, 8IPY|1|2|U|1302, 8IPY|1|2|A|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_018 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3123

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8IPY|1|2|G|443
8IPY|1|2|G|444
8IPY|1|2|U|445
8IPY|1|2|C|446
*
8IPY|1|2|G|1300
8IPY|1|2|C|1301
8IPY|1|2|U|1302
8IPY|1|2|A|1303
8IPY|1|2|C|1304

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a