IL_8IPY_023

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8IPY|1|2|G|483, 8IPY|1|2|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_023 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2037

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8IPY|1|2|G|482
8IPY|1|2|G|483
8IPY|1|2|U|484
8IPY|1|2|C|485
*
8IPY|1|2|G|671
8IPY|1|2|C|672

Current chains

Chain 2

28S rRNA

Nearby chains