3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGUC*GC
Length
6 nucleotides
Bulged bases
8IPY|1|2|G|483, 8IPY|1|2|U|484
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IPY_023 not in the Motif Atlas
Geometric match to IL_1NBS_009
Geometric discrepancy: 0.2037
The information below is about IL_1NBS_009
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_71421.1
Basepair signature
cWW-cWW
Number of instances in this motif group
27

Unit IDs

8IPY|1|2|G|482
8IPY|1|2|G|483
8IPY|1|2|U|484
8IPY|1|2|C|485
*
8IPY|1|2|G|671
8IPY|1|2|C|672

Current chains

Chain 2
28S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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