IL_8IPY_023
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUC*GC
- Length
- 6 nucleotides
- Bulged bases
- 8IPY|1|2|G|483, 8IPY|1|2|U|484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_023 not in the Motif Atlas
- Geometric match to IL_1NBS_009
- Geometric discrepancy: 0.2037
- The information below is about IL_1NBS_009
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_71421.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 27
Unit IDs
8IPY|1|2|G|482
8IPY|1|2|G|483
8IPY|1|2|U|484
8IPY|1|2|C|485
*
8IPY|1|2|G|671
8IPY|1|2|C|672
Current chains
- Chain 2
- 28S rRNA
Nearby chains
No other chains within 10ÅColoring options: