IL_8IPY_079
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8IPY|1|2|G|1975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_079 not in the Motif Atlas
- Geometric match to IL_4V9F_043
- Geometric discrepancy: 0.2536
- The information below is about IL_4V9F_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.3
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8IPY|1|2|G|1973
8IPY|1|2|U|1974
8IPY|1|2|G|1975
8IPY|1|2|G|1976
8IPY|1|2|C|1977
*
8IPY|1|2|G|1989
8IPY|1|2|A|1990
8IPY|1|2|A|1991
8IPY|1|2|U|1992
8IPY|1|2|C|1993
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain W
- Notchless protein homolog 1
- Chain v
- mRNA turnover protein 4 homolog
- Chain w
- G Protein Nucleolar 2
- Chain y
- 60S ribosomal protein L12
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