3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
G(E7G)U*GCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IPY_083 not in the Motif Atlas
Geometric match to IL_4AOB_005
Geometric discrepancy: 0.143
The information below is about IL_4AOB_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_23751.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
5

Unit IDs

8IPY|1|2|G|2296
8IPY|1|2|E7G|2297
8IPY|1|2|U|2298
*
8IPY|1|2|G|2336
8IPY|1|2|C|2337
8IPY|1|2|C|2338

Current chains

Chain 2
28S rRNA

Nearby chains

Chain D
60S ribosomal protein L4
Chain k
60S ribosomal protein L32
Chain l
60S ribosomal protein L28

Coloring options:


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