3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGUAAC*GGAUAAG
Length
13 nucleotides
Bulged bases
8IPY|1|2|U|2880
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IPY_104 not in the Motif Atlas
Homologous match to IL_8C3A_084
Geometric discrepancy: 0.1057
The information below is about IL_8C3A_084
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65969.4
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8IPY|1|2|C|2867
8IPY|1|2|G|2868
8IPY|1|2|U|2869
8IPY|1|2|A|2870
8IPY|1|2|A|2871
8IPY|1|2|C|2872
*
8IPY|1|2|G|2877
8IPY|1|2|G|2878
8IPY|1|2|A|2879
8IPY|1|2|U|2880
8IPY|1|2|A|2881
8IPY|1|2|A|2882
8IPY|1|2|G|2883

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 9
Zinc finger protein 593
Chain X
60S ribosomal protein L37a
Chain w
G Protein Nucleolar 2

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