IL_8IPY_104
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8IPY|1|2|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_104 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.1057
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IPY|1|2|C|2867
8IPY|1|2|G|2868
8IPY|1|2|U|2869
8IPY|1|2|A|2870
8IPY|1|2|A|2871
8IPY|1|2|C|2872
*
8IPY|1|2|G|2877
8IPY|1|2|G|2878
8IPY|1|2|A|2879
8IPY|1|2|U|2880
8IPY|1|2|A|2881
8IPY|1|2|A|2882
8IPY|1|2|G|2883
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 9
- Zinc finger protein 593
- Chain X
- 60S ribosomal protein L37a
- Chain w
- G Protein Nucleolar 2
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