IL_8IPY_115

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

8IPY|1|2|G|3735

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_115 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1843

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8IPY|1|2|U|3715
8IPY|1|2|C|3716
8IPY|1|2|A|3717
8IPY|1|2|A2M|3718
8IPY|1|2|A|3719
8IPY|1|2|G|3720
8IPY|1|2|U|3721
*
8IPY|1|2|A|3732
8IPY|1|2|A|3733
8IPY|1|2|U|3734
8IPY|1|2|G|3735
8IPY|1|2|A|3736
8IPY|1|2|A|3737
8IPY|1|2|G|3738

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain N

Protein SDA1 homolog