IL_8IPY_125
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- G(5MU)GAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8IPY|1|2|G|4084, 8IPY|1|2|G|4086, 8IPY|1|2|G|4087, 8IPY|1|2|C|4162, 8IPY|1|2|U|4163
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_125 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.2202
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8IPY|1|2|G|4082
8IPY|1|2|5MU|4083
8IPY|1|2|G|4084
8IPY|1|2|A|4085
8IPY|1|2|G|4086
8IPY|1|2|G|4087
8IPY|1|2|C|4088
*
8IPY|1|2|G|4161
8IPY|1|2|C|4162
8IPY|1|2|U|4163
8IPY|1|2|C|4164
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L7a
- Chain f
- Ribosome biogenesis protein NOP53
- Chain g
- 60S ribosomal protein L23a
- Chain m
- 60S ribosomal protein L8
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