IL_8IPY_133

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GUG(A2M)G

Length

8 nucleotides

Bulged bases

8IPY|1|2|G|4522

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_133 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1294

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8IPY|1|2|C|4456
8IPY|1|2|U|4457
8IPY|1|2|C|4458
*
8IPY|1|2|G|4520
8IPY|1|2|U|4521
8IPY|1|2|G|4522
8IPY|1|2|A2M|4523
8IPY|1|2|G|4524

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L23