3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAUUAU*AGAAUC
Length
12 nucleotides
Bulged bases
8IPY|1|2|A|4708
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IPY_148 not in the Motif Atlas
Geometric match to IL_5J7L_350
Geometric discrepancy: 0.1535
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8IPY|1|2|G|4680
8IPY|1|2|A|4681
8IPY|1|2|U|4682
8IPY|1|2|U|4683
8IPY|1|2|A|4684
8IPY|1|2|U|4685
*
8IPY|1|2|A|4705
8IPY|1|2|G|4706
8IPY|1|2|A|4707
8IPY|1|2|A|4708
8IPY|1|2|U|4709
8IPY|1|2|C|4710

Current chains

Chain 2
28S rRNA

Nearby chains

Chain I
60S ribosomal protein L9
Chain J
Ribosome biogenesis protein NSA2 homolog
Chain V
60S ribosomal protein L13a
Chain u
Guanine nucleotide-binding protein-like 3
Chain z
Protein LLP homolog

Coloring options:


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