3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AUUAU*AGAAU
Length
10 nucleotides
Bulged bases
8IPY|1|2|A|4708
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IPY_187 not in the Motif Atlas
Homologous match to IL_8C3A_129
Geometric discrepancy: 0.1826
The information below is about IL_8C3A_129
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

8IPY|1|2|A|4681
8IPY|1|2|U|4682
8IPY|1|2|U|4683
8IPY|1|2|A|4684
8IPY|1|2|U|4685
*
8IPY|1|2|A|4705
8IPY|1|2|G|4706
8IPY|1|2|A|4707
8IPY|1|2|A|4708
8IPY|1|2|U|4709

Current chains

Chain 2
28S rRNA

Nearby chains

Chain I
60S ribosomal protein L9
Chain J
Ribosome biogenesis protein NSA2 homolog
Chain V
60S ribosomal protein L13a
Chain u
Guanine nucleotide-binding protein-like 3
Chain z
Protein LLP homolog

Coloring options:


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