3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGUC*GCUAC
Length
9 nucleotides
Bulged bases
8IR1|1|2|C|1301
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_018 not in the Motif Atlas
Geometric match to IL_6AZ4_001
Geometric discrepancy: 0.3363
The information below is about IL_6AZ4_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69145.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
5

Unit IDs

8IR1|1|2|G|443
8IR1|1|2|G|444
8IR1|1|2|U|445
8IR1|1|2|C|446
*
8IR1|1|2|G|1300
8IR1|1|2|C|1301
8IR1|1|2|U|1302
8IR1|1|2|A|1303
8IR1|1|2|C|1304

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain k
60S ribosomal protein L32
Chain n
60S ribosomal protein L35a

Coloring options:


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