IL_8IR1_024

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8IR1|1|2|G|666, 8IR1|1|2|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_024 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.3634

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8IR1|1|2|G|487
8IR1|1|2|G|488
*
8IR1|1|2|C|665
8IR1|1|2|G|666
8IR1|1|2|A|667
8IR1|1|2|C|668
8IR1|1|2|C|669

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain l

60S ribosomal protein L28