IL_8IR1_041

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8IR1|1|2|C|1214, 8IR1|1|2|C|1215

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_041 not in the Motif Atlas

Geometric match to IL_4KQ0_005

Geometric discrepancy: 0.3168

The information below is about IL_4KQ0_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8IR1|1|2|C|1082
8IR1|1|2|U|1083
8IR1|1|2|C|1084
*
8IR1|1|2|G|1213
8IR1|1|2|C|1214
8IR1|1|2|C|1215
8IR1|1|2|C|1216
8IR1|1|2|G|1217

Current chains

Chain 2

28S rRNA

Nearby chains

Chain p

60S ribosomal protein L7