3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUC*GCCCG
Length
8 nucleotides
Bulged bases
8IR1|1|2|C|1214, 8IR1|1|2|C|1215
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_041 not in the Motif Atlas
Geometric match to IL_4KQ0_005
Geometric discrepancy: 0.3168
The information below is about IL_4KQ0_005
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

8IR1|1|2|C|1082
8IR1|1|2|U|1083
8IR1|1|2|C|1084
*
8IR1|1|2|G|1213
8IR1|1|2|C|1214
8IR1|1|2|C|1215
8IR1|1|2|C|1216
8IR1|1|2|G|1217

Current chains

Chain 2
28S rRNA

Nearby chains

Chain p
60S ribosomal protein L7

Coloring options:


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