IL_8IR1_050

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8IR1|1|2|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_050 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2244

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8IR1|1|2|G|1360
8IR1|1|2|G|1361
*
8IR1|1|2|C|1376
8IR1|1|2|G|1377
8IR1|1|2|C|1378
8IR1|1|2|C|1379

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15