IL_8IR1_052

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUC*G(B8Q)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_052 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2959

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IR1|1|2|G|1425
8IR1|1|2|G|1426
8IR1|1|2|A|1427
8IR1|1|2|U|1428
8IR1|1|2|C|1429
*
8IR1|1|2|G|1455
8IR1|1|2|B8Q|1456
8IR1|1|2|G|1457
8IR1|1|2|C|1458
8IR1|1|2|A|1459
8IR1|1|2|C|1460

Current chains

Chain 2

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L18