IL_8IR1_094

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUGG*C(OMG)C

Length

9 nucleotides

Bulged bases

8IR1|1|2|G|2544, 8IR1|1|2|U|2545

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_094 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3669

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8IR1|1|2|G|2542
8IR1|1|2|A|2543
8IR1|1|2|G|2544
8IR1|1|2|U|2545
8IR1|1|2|G|2546
8IR1|1|2|G|2547
*
8IR1|1|2|C|2772
8IR1|1|2|OMG|2773
8IR1|1|2|C|2774

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain O

60S ribosomal protein L38