IL_8IR1_107

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8IR1|1|2|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_107 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1796

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8IR1|1|2|A|2850
8IR1|1|2|G|2851
8IR1|1|2|U|2852
8IR1|1|2|C|2853
8IR1|1|2|G|2854
8IR1|1|2|G|2855
*
8IR1|1|2|C|3837
8IR1|1|2|U|3838
8IR1|1|2|G|3839
8IR1|1|2|U|3840

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L23

Chain w

G Protein Nucleolar 2