IL_8IR1_112

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8IR1|1|2|A|3663, 8IR1|1|2|U|3679, 8IR1|1|2|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_112 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1552

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8IR1|1|2|C|3660
8IR1|1|2|G|3661
8IR1|1|2|A|3662
8IR1|1|2|A|3663
8IR1|1|2|G|3664
8IR1|1|2|G|3665
*
8IR1|1|2|U|3677
8IR1|1|2|G|3678
8IR1|1|2|U|3679
8IR1|1|2|U|3680
8IR1|1|2|G|3681
8IR1|1|2|A|3682
8IR1|1|2|C|3683
8IR1|1|2|G|3684

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8