IL_8IR1_163
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUCUC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_163 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.1731
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
8IR1|1|W|A|32
8IR1|1|W|U|33
8IR1|1|W|C|34
8IR1|1|W|U|35
8IR1|1|W|C|36
*
8IR1|1|W|G|41
8IR1|1|W|A|42
8IR1|1|W|U|43
8IR1|1|W|C|44
8IR1|1|W|U|45
Current chains
- Chain W
- 5S RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- 60S ribosomal protein L11
- Chain C
- 60S ribosomal protein L5
Coloring options: