IL_8IR1_164
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_164 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.3185
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8IR1|1|W|G|71
8IR1|1|W|U|72
8IR1|1|W|U|73
8IR1|1|W|A|74
8IR1|1|W|G|75
8IR1|1|W|U|76
8IR1|1|W|A|77
8IR1|1|W|C|78
*
8IR1|1|W|G|98
8IR1|1|W|G|99
8IR1|1|W|A|100
8IR1|1|W|A|101
8IR1|1|W|U|102
8IR1|1|W|A|103
8IR1|1|W|C|104
Current chains
- Chain W
- 5S RNA
Nearby chains
- Chain T
- Ribosome production factor 2 homolog
Coloring options: