3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAUG*CGC
Length
7 nucleotides
Bulged bases
8IR1|1|W|U|84
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_166 not in the Motif Atlas
Homologous match to IL_8C3A_149
Geometric discrepancy: 0.2323
The information below is about IL_8C3A_149
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_10289.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
237

Unit IDs

8IR1|1|W|G|82
8IR1|1|W|A|83
8IR1|1|W|U|84
8IR1|1|W|G|85
*
8IR1|1|W|C|92
8IR1|1|W|G|93
8IR1|1|W|C|94

Current chains

Chain W
5S RNA

Nearby chains

No other chains within 10Å

Coloring options:


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