IL_8IR1_166
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 8IR1|1|W|U|84
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_166 not in the Motif Atlas
- Homologous match to IL_8C3A_149
- Geometric discrepancy: 0.2323
- The information below is about IL_8C3A_149
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8IR1|1|W|G|82
8IR1|1|W|A|83
8IR1|1|W|U|84
8IR1|1|W|G|85
*
8IR1|1|W|C|92
8IR1|1|W|G|93
8IR1|1|W|C|94
Current chains
- Chain W
- 5S RNA
Nearby chains
No other chains within 10ÅColoring options: