3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
ACUUU*GAACU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_172 not in the Motif Atlas
Geometric match to IL_7VYX_004
Geometric discrepancy: 0.3725
The information below is about IL_7VYX_004
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_71154.1
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
10

Unit IDs

8IR1|1|2|A|1858
8IR1|1|2|C|1859
8IR1|1|2|U|1860
8IR1|1|2|U|1861
8IR1|1|2|U|1862
*
8IR1|1|2|G|1872
8IR1|1|2|A|1873
8IR1|1|2|A|1874
8IR1|1|2|C|1875
8IR1|1|2|U|1876

Current chains

Chain 2
28S rRNA

Nearby chains

Chain c
60S ribosomal protein L21
Chain p
60S ribosomal protein L7
Chain u
Guanine nucleotide-binding protein-like 3
Chain w
G Protein Nucleolar 2

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