IL_8IR1_172
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACUUU*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_172 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3725
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8IR1|1|2|A|1858
8IR1|1|2|C|1859
8IR1|1|2|U|1860
8IR1|1|2|U|1861
8IR1|1|2|U|1862
*
8IR1|1|2|G|1872
8IR1|1|2|A|1873
8IR1|1|2|A|1874
8IR1|1|2|C|1875
8IR1|1|2|U|1876
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain c
- 60S ribosomal protein L21
- Chain p
- 60S ribosomal protein L7
- Chain u
- Guanine nucleotide-binding protein-like 3
- Chain w
- G Protein Nucleolar 2
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