IL_8IR3_092

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR3_092 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1826

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8IR3|1|2|A|2477
8IR3|1|2|C|2478
8IR3|1|2|G|2479
*
8IR3|1|2|C|2499
8IR3|1|2|U|2500

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain f

Ribosome biogenesis protein NOP53

Chain g

60S ribosomal protein L23a

Chain q

Pescadillo homolog