IL_8IR3_166
3D structure
- PDB id
- 8IR3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State B'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUCUC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR3_166 not in the Motif Atlas
- Homologous match to IL_7RQB_114
- Geometric discrepancy: 0.1731
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
8IR3|1|5|A|32
8IR3|1|5|U|33
8IR3|1|5|C|34
8IR3|1|5|U|35
8IR3|1|5|C|36
*
8IR3|1|5|G|41
8IR3|1|5|A|42
8IR3|1|5|U|43
8IR3|1|5|C|44
8IR3|1|5|U|45
Current chains
- Chain 5
- 5S RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- 60S ribosomal protein L11
- Chain C
- 60S ribosomal protein L5
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