IL_8J1Z_007

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0702

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8J1Z|1|a|C|239
8J1Z|1|a|C|240
8J1Z|1|a|A|241
8J1Z|1|a|G|242
8J1Z|1|a|U|243
8J1Z|1|a|A|244
8J1Z|1|a|G|245
*
8J1Z|1|a|C|253
8J1Z|1|a|G|254
8J1Z|1|a|A|255
8J1Z|1|a|A|256
8J1Z|1|a|C|257
8J1Z|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15