IL_8J1Z_026

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_026 not in the Motif Atlas

Homologous match to IL_5J7L_269

Geometric discrepancy: 0.1503

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8J1Z|1|a|U|850
8J1Z|1|a|C|851
*
8J1Z|1|a|G|926
8J1Z|1|a|A|927
8J1Z|1|a|A|928

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

50S ribosomal protein L30